Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015860842.1_cds_XP_016514744.1_27164
CDS Infomation

[gene=LOC107831492] [db_xref=GeneID:107831492] [protein=synaptotagmin-5-like] [protein_id=XP_016514744.1] [location=join(10342..10446,10562..10666,11645..11695,11831..11951,12660..12781,13683..13784,14549..14623,14804..14883,15206..15356,15442..15672,16105..16398,17238..17351,17640..17786)] [gbkey=CDS]
Sequence

ATGTCATTTATTTTAGGGGTTGTGATTGGTGTTACATTTGGACTTGCTATAATAATTGCT
TTTGTTAAATCAGAAAATGCAAGATCTAAATACCGTACTGAACTGGCTAGTGGAATTGCT
GCATTTGCTAGAATGACAGTGGATGATTCGAGAAAGATCTTCACACCAGAACAATACCCT
TCTTGGGTTGTTTTTTCCAATCAGCAAAAGTTGAAGTGGCTTAATTCTCATCTTGAAAAG
ATCTGGCCATATGTGGATGAGGCAGCATCAGAACTGGTAAAGTCAAGTGTGGAGCCAGTT
TTGGAACAATATAGGCCTGTGATTTTGGCGTCATTAAAATTTTCAAAGTTCACTCTTGGT
ACAGTTGCTCCACAATTCACAGGGATTTCTATTATTGAAGATGGAAGTGAGGGTATTACC
ATGGAATTAGAGATGCAATGGGATGGGAACCCAAGCATAATACTCGATATCAAGACTTAT
GTTGGTGTAGCATTACCAGTCCAGGTGAAAAACATTGGGTTTACTGGTATTTTTAGGCTG
ATCTTCAGGCCACTTGTTGATGAGTTTCCTTGCTTTGGAGCTGTATGTTACTCTCTGAGG
CAGAAGAAAAAGCTGGATTTTACGCTTAAAGTAATTGGTGGTGACATGACAGCAATTCCT
GGCCTTTCTGATGCAATTGAGGGAACCATCCGGGATGCTATTGAAGACTCTATCACATGG
CCGGTTCGAAAAGTTATTCCCATTTTACCTGGGGATTATAGTGATCTTGAACTGAAGCCT
ACTGGAGTATTGGAGGTGAAACTTATTCAAGCAAAGGAGTTAACAAATAAAGACCTCATT
GGAAAATCTGATCCTTTTGCTGTATTATATGTACGCCCTATACGAGATAGAATGAAGAAG
AGCAAAATAATTAACAACGATTTGAACCCAATCTGGAATGAGCATTTTGAGTTCGTAGTT
GAAGATCCACTGACACAACACTTGGTGGTAAAAATCTATGACGATGAAGGGCTTCAGTCA
GCTGAACTACTTGGATGTGCCCATATCCGTTTGAATGAGCTTGAGCCAGGTAAAGTAAAG
GATATCTGGTTGAAGTTGGTGAAAGATTTGGAGATTCAGAGAGACCAGAAAAATAGGGGC
CAGGTGCATTTGGAGCTATTGTATTGTCCTATTGGCATGAAGAATGGGTTAACTAACCCT
TTTTCTCAGACTGAGACAATGACTTCATTAGAGAGAGTTCTTAAAAATGGGGCAGAAGGA
AACGAAACTAGTCCAAATGGAGGTGAAATCAGCAAAAGAAGGGAAGTAATAGTACGAGGG
GTACTTTCTGTTACTGTGATATCAGCTGATGACCTGCCCCCAGCTGATATAGGGGGGAAA
GCTGACCCCTACGCCGTGCTGATTATGAAGAAGGCGCAAATCAAGAACAAAACCAGGGTC
GTAAATGAAAGCCTAAATCCAGTTTGGAATCAGACTTTTGACTTTGTTGTTGAGGATGGA
TTACATGATATGCTAATTGTGGAAGTCTGGGACCATGACACATTTGGAAAGGATTTCATG
GGAAAATGCATACTGACTTTAACAAGGGTTCTAATGGAAGGTGAATATAAAGACACCTTC
GAATTATCCGAGTCTAAATCAGGGAAACTGAACTTGCATCTCAAATGGAACCCACAGCCA
TTATACAGAGACTCCTAG

Peptide Sequence

PEP ID

XP_016514744.1
PEP Infomation

PREDICTED: synaptotagmin-5-like [Nicotiana tabacum]
Sequence

MSFILGVVIGVTFGLAIIIAFVKSENARSKYRTELASGIAAFARMTVDDSRKIFTPEQYP
SWVVFSNQQKLKWLNSHLEKIWPYVDEAASELVKSSVEPVLEQYRPVILASLKFSKFTLG
TVAPQFTGISIIEDGSEGITMELEMQWDGNPSIILDIKTYVGVALPVQVKNIGFTGIFRL
IFRPLVDEFPCFGAVCYSLRQKKKLDFTLKVIGGDMTAIPGLSDAIEGTIRDAIEDSITW
PVRKVIPILPGDYSDLELKPTGVLEVKLIQAKELTNKDLIGKSDPFAVLYVRPIRDRMKK
SKIINNDLNPIWNEHFEFVVEDPLTQHLVVKIYDDEGLQSAELLGCAHIRLNELEPGKVK
DIWLKLVKDLEIQRDQKNRGQVHLELLYCPIGMKNGLTNPFSQTETMTSLERVLKNGAEG
NETSPNGGEISKRREVIVRGVLSVTVISADDLPPADIGGKADPYAVLIMKKAQIKNKTRV
VNESLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDFMGKCILTLTRVLMEGEYKDTF
ELSESKSGKLNLHLKWNPQPLYRDS

Transcript Sequence

Gene sequence data has not been registered.